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Crystal structure of CYP105AS1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ZBY PDB entry 2ZBY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277 0.3 M sodium acetate, 0.1 M Tris 10% PEG 8000 (w/v) + 10% PEG 1000 (w/v), pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.62 53.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 133.88 α = 90 b = 133.88 β = 90 c = 73.02 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.97 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.04 29.43 100 0.081 31064 31064
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.04 2.088 100 0.432 1.91
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2ZBY 2.04 29.43 29496 29496 1568 100 0.19753 0.195 0.24653 0.2632 RANDOM 26.702
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 -0.07 -0.14 0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.788 r_dihedral_angle_4_deg 20.264 r_dihedral_angle_3_deg 15.712 r_dihedral_angle_1_deg 6.539 r_scangle_it 4.683 r_scbond_it 3.108 r_mcangle_it 2.049 r_angle_refined_deg 1.908 r_mcbond_it 1.155 r_angle_other_deg 1.069
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.788 r_dihedral_angle_4_deg 20.264 r_dihedral_angle_3_deg 15.712 r_dihedral_angle_1_deg 6.539 r_scangle_it 4.683 r_scbond_it 3.108 r_mcangle_it 2.049 r_angle_refined_deg 1.908 r_mcbond_it 1.155 r_angle_other_deg 1.069 r_mcbond_other 0.328 r_chiral_restr 0.133 r_bond_refined_d 0.025 r_gen_planes_refined 0.011 r_bond_other_d 0.006 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2987 Nucleic Acid Atoms Solvent Atoms 203 Heterogen Atoms 43
Software Software Software Name Purpose GDA data collection PHASER phasing REFMAC refinement XDS data reduction XDS data scaling