☰ Navigation Tabs
Crystal structure of stabilized TEM-1 beta-lactamase variant v.13 carrying R164S/G238S mutations
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.2 293 9% (wt/vol) polyethylene glycol (PEG) 8000, 100 mM MES, and 200mM Ca(OAc)2, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.12 42.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 152.93 α = 90 b = 46.4 β = 93.22 c = 34.43 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.13 38.24 0.063 11.98 3.57 82624 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.13 1.2 85.7 0.199 4.46 3.18
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.13 44.4 78491 4132 91.6 0.124 0.122 0.155 0.1736 RANDOM 15.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 0.31 0.23 -0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.601 r_sphericity_free 32.003 r_dihedral_angle_3_deg 15.661 r_sphericity_bonded 15.537 r_dihedral_angle_4_deg 14.478 r_rigid_bond_restr 8.648 r_dihedral_angle_1_deg 7.735 r_long_range_B_refined 7.633 r_long_range_B_other 7.236 r_scangle_other 5.871
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.601 r_sphericity_free 32.003 r_dihedral_angle_3_deg 15.661 r_sphericity_bonded 15.537 r_dihedral_angle_4_deg 14.478 r_rigid_bond_restr 8.648 r_dihedral_angle_1_deg 7.735 r_long_range_B_refined 7.633 r_long_range_B_other 7.236 r_scangle_other 5.871 r_scbond_it 5.214 r_scbond_other 5.212 r_mcangle_it 4.952 r_mcangle_other 4.951 r_mcbond_other 4.1 r_mcbond_it 4.098 r_angle_refined_deg 2.181 r_angle_other_deg 1.195 r_chiral_restr 0.159 r_bond_refined_d 0.022 r_gen_planes_refined 0.011 r_gen_planes_other 0.004 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2012 Nucleic Acid Atoms Solvent Atoms 377 Heterogen Atoms 6
Software Software Software Name Purpose StructureStudio data collection MOLREP phasing REFMAC refinement XDS data reduction XSCALE data scaling