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Urate OXIDASE IN COMPLEX WITH 8-AZAXANTHINE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2IBA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH 8.5 291 10-15MG/ML URATE OXIDASE, 8-AZAXANTHIN IN EXCESS, 5-8% PEG8000, 50MM TRIS ACETATE, pH 8.5, BATCH, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.97 58.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.109 α = 90 b = 96.175 β = 90 c = 105.407 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 291 CCD MAR CCD 165 mm mirrors 2012-06-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM1A 0.945 ESRF BM1A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.58 70 98.8 0.042 33.4 5 55375 2 2 20.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.58 1.61 95.6 0.364 2.9 4.6 2674
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION RIGID BODY THROUGHOUT 2IBA 1.58 20 52567 2806 98.69 0.16897 0.16781 0.169 0.19055 0.1921 RANDOM 22.78
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.64 -0.66 -0.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.765 r_dihedral_angle_3_deg 13.045 r_dihedral_angle_4_deg 10.023 r_dihedral_angle_1_deg 6.001 r_angle_refined_deg 1.342 r_chiral_restr 0.09 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.765 r_dihedral_angle_3_deg 13.045 r_dihedral_angle_4_deg 10.023 r_dihedral_angle_1_deg 6.001 r_angle_refined_deg 1.342 r_chiral_restr 0.09 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2362 Nucleic Acid Atoms Solvent Atoms 217 Heterogen Atoms 12
Software Software Software Name Purpose MxCuBE data collection REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing