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Avibactam and class C beta-lactamases: mechanism of inhibition, conservation of binding pocket and implications for resistance
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 0.1M Tris, 20% PEG 8000, 0.1M K2HSO4, pH 8.0, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.15 42.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.757 α = 90 b = 71.269 β = 90 c = 106.129 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 PIXEL PSI PILATUS 6M Dectris Pilatus 6M Pixel Array 2013-01-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.00000 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.105 106.129 96.2 0.052 19.4 6.6 105856 124681 6 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.19 1.25 93.5 0.8 0.8 1 6.6 14863
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.1 59.17 124681 6597 95.01 0.1658 0.1647 0.1745 0.1866 0.191 RANDOM 13.893
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.32 0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.691 r_dihedral_angle_4_deg 16.658 r_dihedral_angle_3_deg 12.076 r_dihedral_angle_1_deg 6.574 r_angle_refined_deg 2.499 r_mcangle_it 1.746 r_mcbond_it 1.274 r_mcbond_other 1.247 r_angle_other_deg 1.216 r_chiral_restr 0.136
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.691 r_dihedral_angle_4_deg 16.658 r_dihedral_angle_3_deg 12.076 r_dihedral_angle_1_deg 6.574 r_angle_refined_deg 2.499 r_mcangle_it 1.746 r_mcbond_it 1.274 r_mcbond_other 1.247 r_angle_other_deg 1.216 r_chiral_restr 0.136 r_bond_refined_d 0.029 r_gen_planes_refined 0.014 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2781 Nucleic Acid Atoms Solvent Atoms 536 Heterogen Atoms 17
Software Software Software Name Purpose d*TREK data scaling SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection d*TREK data reduction AMoRE phasing