☰ Navigation Tabs
Ternary host recognition complex of complement factor H, C3d, and sialic acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3OXU PDB ENTRY 3OXU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 293 0.1 M Tris-HCl, pH 9.0, 8% w/v PEG8000, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.86 57.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.459 α = 112.5 b = 82.536 β = 110.71 c = 85.752 γ = 99.98
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M-F 2013-10-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.07 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 46.09 97.2 91260 88718 3 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.21 94.4 2.33
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3OXU 2.15 46.09 91260 83737 4408 97.31 0.1749 0.17234 0.1727 0.22282 0.2231 RANDOM 58.619
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.53 0.53 0.56 -2.56 0.16 1.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.291 r_dihedral_angle_4_deg 17.953 r_dihedral_angle_3_deg 16.778 r_long_range_B_refined 11.098 r_mcangle_it 7.75 r_dihedral_angle_1_deg 6.968 r_scbond_it 6.745 r_mcbond_it 5.604 r_angle_refined_deg 1.527 r_chiral_restr 0.108
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.291 r_dihedral_angle_4_deg 17.953 r_dihedral_angle_3_deg 16.778 r_long_range_B_refined 11.098 r_mcangle_it 7.75 r_dihedral_angle_1_deg 6.968 r_scbond_it 6.745 r_mcbond_it 5.604 r_angle_refined_deg 1.527 r_chiral_restr 0.108 r_bond_refined_d 0.012 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9807 Nucleic Acid Atoms Solvent Atoms 489 Heterogen Atoms 171
Software Software Software Name Purpose DA+ data collection CCP4 model building REFMAC refinement XDS data reduction XDS data scaling CCP4 phasing