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Crystal Structure of ICAM-5 D1-D4 ectodomain fragment, Space Group P21
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.6 294 100 mM Tris-HCl 8.5, 10% PEG4000, pH 5.6, VAPOR DIFFUSION, temperature 294K
Crystal Properties Matthews coefficient Solvent content 3.77 67.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.59 α = 90 b = 46.91 β = 104.34 c = 95.79 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2005-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM16 0.9 ESRF BM16
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 22 99.7 0.131 23138 23117 44431 44431
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 2.5 22.421 1.25 20738 2325 99.53 0.2513 0.2476 0.246 0.2634 0.2654
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 23.282 f_angle_d 0.931 f_chiral_restr 0.058 f_plane_restr 0.005 f_bond_d 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2892 Nucleic Acid Atoms Solvent Atoms 97 Heterogen Atoms 328
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing PHENIX refinement XDS data reduction SCALA data scaling