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C. Elegans Clp1 bound to AMP-PNP, and Mg2+
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 100 mM Na2HPO4/KH2PO4
200 mM NaCl
15 mM MgCl2
90 mM sarcosine
25% (w/v) PEG 1000, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.45 49.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.72 α = 90 b = 100.72 β = 90 c = 40.38 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2010-03-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 87.23 99.7 4.8 40589 -3 43.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.4 99.5 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 87.23 19319 1018 100 0.19463 0.19228 0.1862 0.23955 0.2343 RANDOM 31.459
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.29 -0.14 -0.29 0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.598 r_dihedral_angle_4_deg 17.044 r_dihedral_angle_3_deg 14.555 r_dihedral_angle_1_deg 6.019 r_scangle_it 2.878 r_scbond_it 1.849 r_angle_refined_deg 1.312 r_mcangle_it 1.074 r_angle_other_deg 0.83 r_mcbond_it 0.548
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.598 r_dihedral_angle_4_deg 17.044 r_dihedral_angle_3_deg 14.555 r_dihedral_angle_1_deg 6.019 r_scangle_it 2.878 r_scbond_it 1.849 r_angle_refined_deg 1.312 r_mcangle_it 1.074 r_angle_other_deg 0.83 r_mcbond_it 0.548 r_mcbond_other 0.106 r_chiral_restr 0.078 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3098 Nucleic Acid Atoms Solvent Atoms 106 Heterogen Atoms 42
Software Software Software Name Purpose DNA data collection HKL2Map model building REFMAC refinement XDS data reduction XSCALE data scaling HKL2Map phasing