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High resolution crystal structure of the unliganded ZO-1 PDZ1 domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 293 30% PEG2K MME, 0.1 M NaAc pH4.6, 0.2 M AmSO4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.37 48.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.993 α = 90 b = 60.473 β = 124.26 c = 62.217 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2013-07-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97856 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.89 30 95.1 0.028 17.46 24585 24585
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.89 2.01 94.2 0.448 2.71 3900
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 30 21085 21085 1145 87.09 0.19779 0.1953 0.2081 0.24282 0.2514 RANDOM 36.904
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.76 -0.9 2.55 -1.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.674 r_dihedral_angle_4_deg 27.272 r_dihedral_angle_3_deg 18.132 r_long_range_B_refined 6.639 r_long_range_B_other 6.557 r_dihedral_angle_1_deg 6.498 r_scangle_other 5.052 r_scbond_other 3.298 r_scbond_it 3.295 r_mcangle_it 3.197
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.674 r_dihedral_angle_4_deg 27.272 r_dihedral_angle_3_deg 18.132 r_long_range_B_refined 6.639 r_long_range_B_other 6.557 r_dihedral_angle_1_deg 6.498 r_scangle_other 5.052 r_scbond_other 3.298 r_scbond_it 3.295 r_mcangle_it 3.197 r_mcangle_other 3.196 r_mcbond_other 2.252 r_mcbond_it 2.251 r_angle_refined_deg 1.558 r_angle_other_deg 1.209 r_chiral_restr 0.099 r_bond_refined_d 0.012 r_bond_other_d 0.006 r_gen_planes_refined 0.005 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2037 Nucleic Acid Atoms Solvent Atoms 96 Heterogen Atoms 85
Software Software Software Name Purpose CrystalClear data collection MOLREP phasing REFMAC refinement XDS data reduction XDS data scaling