☰ Navigation Tabs
Crystal structure of a DUF1312 family protein (EF3258) from Enterococcus faecalis V583 at 1.73 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 6 293 30.0000% polyethylene glycol 6000, 0.1M MES pH 6.0, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.02 39.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 27.259 α = 90 b = 49.16 β = 90 c = 71.776 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing) 2013-11-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.73 40.559 96.4 0.054 15.25 10218 -3 23.033
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.73 1.79 78.1 0.684 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.734 40.559 10216 485 97 0.1704 0.169 0.1806 0.1992 0.2091 RANDOM 29.7179
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.78 0.33 2.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.707 r_dihedral_angle_4_deg 13.967 r_dihedral_angle_3_deg 9.935 r_dihedral_angle_1_deg 6.134 r_mcangle_it 2.354 r_mcbond_it 1.343 r_mcbond_other 1.334 r_angle_refined_deg 1.091 r_angle_other_deg 0.674 r_chiral_restr 0.069
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.707 r_dihedral_angle_4_deg 13.967 r_dihedral_angle_3_deg 9.935 r_dihedral_angle_1_deg 6.134 r_mcangle_it 2.354 r_mcbond_it 1.343 r_mcbond_other 1.334 r_angle_refined_deg 1.091 r_angle_other_deg 0.674 r_chiral_restr 0.069 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 685 Nucleic Acid Atoms Solvent Atoms 79 Heterogen Atoms 9
Software Software Software Name Purpose MolProbity model building PDB_EXTRACT data extraction XSCALE data scaling REFMAC refinement XDS data reduction