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BldD CTD-c-di-GMP complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other P32 STARTING MODEL WITH SEMET
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 298 35% PEG 400, 0.1 M acetic acid pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.67 53.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.5 α = 90 b = 86.5 β = 90 c = 151.48 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r MIRRORS 2013-03-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 75.7 98.5 0.057 0.035 11.4 3.5 90983 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.06 62.2 0.395 0.415 1.7 2.7
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT P32 STARTING MODEL WITH SEMET 1.95 74.91 1.96 92368 90983 2023 98.5 0.208 0.198 0.2048 0.234 0.2355
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.8553 -1.8553 3.7106
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 45.964 f_angle_d 2.512 f_chiral_restr 0.398 f_bond_d 0.021 f_plane_restr 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7289 Nucleic Acid Atoms Solvent Atoms 436 Heterogen Atoms 1103
Software Software Software Name Purpose ADSC data collection PHASER phasing PHENIX refinement MOSFLM data reduction SCALA data scaling