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Crystal structure of Thermus thermophilis transhydrogeanse domain II dimer
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 lipidic subic phase 8.5 298 100 mM Tris pH 8.5, 350 mM NH4-formate, 100mM Na-thiocynate, and 18% (v/v) 1-4-butanediol, lipidic subic phase, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.51 64.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 125.408 α = 90 b = 86.92 β = 94.55 c = 98.978 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.99930 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.77 98.7 24865
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.77 98.67 24865 1354 96.58 0.20713 0.20406 0.26858 0.2515 RANDOM 83.705
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 -0.58 0.28 -0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.373 r_dihedral_angle_3_deg 22.646 r_dihedral_angle_4_deg 22.537 r_long_range_B_refined 12.297 r_mcangle_it 8.739 r_scbond_it 7.688 r_dihedral_angle_1_deg 6.586 r_mcbond_it 6.227 r_angle_refined_deg 1.772 r_chiral_restr 0.125
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.373 r_dihedral_angle_3_deg 22.646 r_dihedral_angle_4_deg 22.537 r_long_range_B_refined 12.297 r_mcangle_it 8.739 r_scbond_it 7.688 r_dihedral_angle_1_deg 6.586 r_mcbond_it 6.227 r_angle_refined_deg 1.772 r_chiral_restr 0.125 r_bond_refined_d 0.012 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5201 Nucleic Acid Atoms Solvent Atoms 9 Heterogen Atoms 2
Software Software Software Name Purpose Blu-Ice data collection SHELXS phasing REFMAC refinement MOSFLM data reduction SCALA data scaling