☰ Navigation Tabs
Crystal Structure of the GerD spore germination protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 277 0.1M Tris-HCl, 15% ethyl alcohol, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.16 43.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.748 α = 90 b = 98.45 β = 90 c = 127.485 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r mirrors 2009-06-16 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.96 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.29 54.47 99.9 0.089 0.089 30.5 14.4 34394 34360 39.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.29 2.38 99.9 0.463 0.463 6.3 14.4 3365
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.293 54.47 1 34938 32570 1734 99.52 0.21 0.20283 0.20009 0.2074 0.25594 0.2585 RANDOM 64.439
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.85 -4.33 0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.913 r_dihedral_angle_4_deg 15.635 r_dihedral_angle_3_deg 14.915 r_scangle_it 7.189 r_scbond_it 4.905 r_dihedral_angle_1_deg 4.642 r_mcangle_it 2.544 r_mcbond_it 1.418 r_angle_refined_deg 1.144 r_angle_other_deg 0.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.913 r_dihedral_angle_4_deg 15.635 r_dihedral_angle_3_deg 14.915 r_scangle_it 7.189 r_scbond_it 4.905 r_dihedral_angle_1_deg 4.642 r_mcangle_it 2.544 r_mcbond_it 1.418 r_angle_refined_deg 1.144 r_angle_other_deg 0.87 r_mcbond_other 0.358 r_chiral_restr 0.062 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5193 Nucleic Acid Atoms Solvent Atoms 159 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection SOLVE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling