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Structure of Infrared Fluorescent Protein 1.4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3S7N PDB ENTRY 3S7N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 295 Mother liquor 6% PEG 4000, 10% glycerol, 0.07 M sodium acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.38 48.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.162 α = 90 b = 53.228 β = 90.6 c = 66.796 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2011-08-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 1.6 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.62 30 93.7 0.068 29.7 7.1 40554 38000 18
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.7 99.9 0.219 8.84 6.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3S7N 1.652 24.04 36067 1876 93.38 0.18606 0.18477 0.1949 0.21073 0.22 RANDOM 20.579
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.74 r_dihedral_angle_3_deg 12.151 r_dihedral_angle_4_deg 10.831 r_dihedral_angle_1_deg 6.375 r_long_range_B_refined 4.432 r_long_range_B_other 4.431 r_scangle_other 2.415 r_mcangle_it 2.215 r_mcangle_other 2.215 r_angle_refined_deg 1.508
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.74 r_dihedral_angle_3_deg 12.151 r_dihedral_angle_4_deg 10.831 r_dihedral_angle_1_deg 6.375 r_long_range_B_refined 4.432 r_long_range_B_other 4.431 r_scangle_other 2.415 r_mcangle_it 2.215 r_mcangle_other 2.215 r_angle_refined_deg 1.508 r_scbond_it 1.506 r_scbond_other 1.505 r_mcbond_it 1.325 r_mcbond_other 1.324 r_angle_other_deg 1 r_chiral_restr 0.075 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2374 Nucleic Acid Atoms Solvent Atoms 227 Heterogen Atoms 86
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling