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Semisynthetic RNase S1-15-H7/11-Q10
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2RNS pdb entry 2RNS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 3.8 292 100 mM sodium citrate
2.4 M ammonium sulfate, pH 3.8, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.02 39.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.91 α = 90 b = 43.91 β = 90 c = 96.4 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-07-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.976 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.22 38.03 165816 32726 -3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 2RNS 1.22 29.87 31660 1064 99.66 0.18547 0.18407 0.1878 0.22599 0.2276 RANDOM 23.081
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.38 1.38 1.38 -4.47
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 45.991 r_dihedral_angle_2_deg 35.247 r_sphericity_bonded 20.852 r_dihedral_angle_4_deg 19.851 r_dihedral_angle_3_deg 12.27 r_rigid_bond_restr 7.191 r_dihedral_angle_1_deg 6.566 r_angle_refined_deg 2.315 r_angle_other_deg 1.366 r_chiral_restr 0.144
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 45.991 r_dihedral_angle_2_deg 35.247 r_sphericity_bonded 20.852 r_dihedral_angle_4_deg 19.851 r_dihedral_angle_3_deg 12.27 r_rigid_bond_restr 7.191 r_dihedral_angle_1_deg 6.566 r_angle_refined_deg 2.315 r_angle_other_deg 1.366 r_chiral_restr 0.144 r_bond_refined_d 0.023 r_gen_planes_refined 0.015 r_gen_planes_other 0.008 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 896 Nucleic Acid Atoms Solvent Atoms 113 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling