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Room temperature macromolecular serial crystallography using synchrotron radiation
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 batch 3 293 14.7 % (w/v) NaCl, 22 % (w/v) PEG 8000, 500 mM acetate buffer pH 3, 100 mg/ml lysozyme, batch, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.11 41.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.3 α = 90 b = 79.3 β = 90 c = 38.2 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 296 PIXEL PSI PILATUS 6M Fresnel zone plate 2013-08-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.27 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 56.07 100 8.1 1755 16081 16081
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.09 2.14 100 1.9 1281
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.09 56.07 7523 6411 709 93.44 0.18152 0.17639 0.1873 0.23011 0.241 RANDOM 51.622
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.22 -1.22 2.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.992 r_dihedral_angle_3_deg 12.891 r_dihedral_angle_4_deg 11.569 r_dihedral_angle_1_deg 5.869 r_mcangle_it 2.265 r_scbond_it 2.056 r_mcbond_it 1.561 r_mcbond_other 1.559 r_angle_refined_deg 1.076 r_angle_other_deg 0.753
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.992 r_dihedral_angle_3_deg 12.891 r_dihedral_angle_4_deg 11.569 r_dihedral_angle_1_deg 5.869 r_mcangle_it 2.265 r_scbond_it 2.056 r_mcbond_it 1.561 r_mcbond_other 1.559 r_angle_refined_deg 1.076 r_angle_other_deg 0.753 r_chiral_restr 0.058 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1000 Nucleic Acid Atoms Solvent Atoms 12 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement PHENIX refinement CrystFEL data reduction CrystFEL data scaling PHASER phasing