X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3W3IPDB ID 3W3I, 1MG9, 1MBX and 3DNJ
experimental modelPDB 1MG9PDB ID 3W3I, 1MG9, 1MBX and 3DNJ
experimental modelPDB 1MBXPDB ID 3W3I, 1MG9, 1MBX and 3DNJ
experimental modelPDB 3DNJPDB ID 3W3I, 1MG9, 1MBX and 3DNJ

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15273Ammonium Sulfate 2 M, NaCl 1.8 M no buffer, pH 5, VAPOR DIFFUSION, HANGING DROP, temperature 273K
Crystal Properties
Matthews coefficientSolvent content
3.7467.13

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 97.85α = 90
b = 97.85β = 90
c = 298.24γ = 120
Symmetry
Space GroupP 61

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray200PIXELPSI PILATUS 6M2013-08-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 14-BM-CAPS14-BM-C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.69973.70397.40.040.0415.82.743001175

Refinement

Statistics
Diffraction IDStructure Solution MethodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONSAD + MRPDB ID 3W3I, 1MG9, 1MBX and 3DNJ2.773.671.374418743001322597.30.1890.1850.239
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
f_dihedral_angle_d13.425
f_angle_d1.232
f_chiral_restr0.048
f_bond_d0.009
f_plane_restr0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6828
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
APSdata collection
SHELXSphasing
PHENIXrefinement
XDSdata reduction
XDSdata scaling