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Apo structure of a methyltransferase component involved in O-demethylation
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 277.15 100mM Tris pH 7.5, 100mM succinic acid, 15%(v/v) PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 277.15K
Crystal Properties Matthews coefficient Solvent content 2.47 50.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.67 α = 90 b = 119.07 β = 90 c = 58.15 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 PIXEL PSI PILATUS 6M 2013-05-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.92 27.7 100 48906
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.92 1.97 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.92 27.69 48828 46314 2463 99.8 0.184 0.182 0.184 0.227 0.2272 RANDOM 17.79
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.21 0.05 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.351 r_dihedral_angle_4_deg 18.095 r_dihedral_angle_3_deg 13.835 r_scangle_it 6.319 r_dihedral_angle_1_deg 6.057 r_scbond_it 3.76 r_mcangle_it 2.248 r_angle_refined_deg 1.913 r_mcbond_it 1.256 r_angle_other_deg 1.086
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.351 r_dihedral_angle_4_deg 18.095 r_dihedral_angle_3_deg 13.835 r_scangle_it 6.319 r_dihedral_angle_1_deg 6.057 r_scbond_it 3.76 r_mcangle_it 2.248 r_angle_refined_deg 1.913 r_mcbond_it 1.256 r_angle_other_deg 1.086 r_mcbond_other 0.385 r_chiral_restr 0.118 r_bond_refined_d 0.025 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4111 Nucleic Acid Atoms Solvent Atoms 413 Heterogen Atoms
Software Software Software Name Purpose GDA data collection BALBES phasing REFMAC refinement xia2 data reduction xia2 data scaling