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Orthorhombic crystal form of pir1 dual specificity phosphatase core
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.5 290 0.1 M Potassium thiocyanate, 30% w/v Polyethylene glycol monomethyl ether 2,000, pH 5.5, VAPOR DIFFUSION, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.25 45.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.026 α = 90 b = 62.723 β = 90 c = 178.773 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD ADSC QUANTUM 315r 2013-03-19 M SINGLE WAVELENGTH 2 1 CCD ADSC QUANTUM 270 2013-04-19
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.070 NSLS X29A 2 SYNCHROTRON NSLS BEAMLINE X6A 0.972 NSLS X6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 15 91 163044 163044 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.24 55.2 0.482 3.03
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.2 6 1.059 163044 153934 8102 90.35 0.1411 0.13897 0.13732 0.16992 0.1808 RANDOM 23.804
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.66 -1.02 0.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.071 r_sphericity_free 32.051 r_sphericity_bonded 18.248 r_dihedral_angle_4_deg 17.25 r_dihedral_angle_3_deg 11.255 r_long_range_B_refined 6.962 r_rigid_bond_restr 6.938 r_dihedral_angle_1_deg 6.734 r_scangle_other 6.598 r_long_range_B_other 6.506
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.071 r_sphericity_free 32.051 r_sphericity_bonded 18.248 r_dihedral_angle_4_deg 17.25 r_dihedral_angle_3_deg 11.255 r_long_range_B_refined 6.962 r_rigid_bond_restr 6.938 r_dihedral_angle_1_deg 6.734 r_scangle_other 6.598 r_long_range_B_other 6.506 r_scbond_it 5.872 r_scbond_other 5.87 r_mcangle_it 4.854 r_mcangle_other 4.854 r_mcbond_it 4.353 r_mcbond_other 4.353 r_angle_refined_deg 1.472 r_angle_other_deg 0.878 r_chiral_restr 0.089 r_gen_planes_refined 0.016 r_bond_refined_d 0.01 r_gen_planes_other 0.009 r_bond_other_d 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4462 Nucleic Acid Atoms Solvent Atoms 831 Heterogen Atoms 18
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling