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SPERM WHALE MYOGLOBIN UNDER 30 BAR NITROUS Oxide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2JHO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH 7 300 50mM potassium phosphate, saturated ammonium sulphate., pH 7, BATCH, temperature 300K
Crystal Properties Matthews coefficient Solvent content 1.92 35.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.449 α = 90 b = 30.545 β = 104.57 c = 63.634 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD ADSC QUANTUM 210r mirrors 2009-10-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM16 0.979 ESRF BM16
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 95.3 0.043 16.8 4.1 18602 21.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.63 93.9 0.258 4.5 4.2 2643
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2JHO 1.55 20 17640 960 95.37 0.19141 0.18954 0.1879 0.22455 0.2241 RANDOM 26.289
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.1 -0.12 1.35 -1.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.836 r_dihedral_angle_4_deg 21.012 r_dihedral_angle_3_deg 14.008 r_dihedral_angle_1_deg 4.318 r_angle_refined_deg 3.04 r_chiral_restr 0.179 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.836 r_dihedral_angle_4_deg 21.012 r_dihedral_angle_3_deg 14.008 r_dihedral_angle_1_deg 4.318 r_angle_refined_deg 3.04 r_chiral_restr 0.179 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1217 Nucleic Acid Atoms Solvent Atoms 53 Heterogen Atoms 72
Software Software Software Name Purpose ADSC data collection REFMAC refinement XDS data reduction SCALA data scaling REFMAC phasing