4NUT

Crystal structure of the complex between Snu13p and the PEP domain of Rsa1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP52932.3M ammonium sulfate, 70mM sodium citrate, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
1.9837.75

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 59.732α = 90
b = 59.732β = 90
c = 92.549γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2013-07-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-40.980ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.555599.82497124971
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.551.6399.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.5536.582336323363125498.360.198310.198310.196480.23507RANDOM26.495
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.030.03-0.07
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.119
r_dihedral_angle_4_deg15.854
r_dihedral_angle_3_deg14.648
r_long_range_B_refined7.202
r_long_range_B_other7.185
r_dihedral_angle_1_deg5.857
r_scangle_other5.195
r_scbond_it3.332
r_scbond_other3.331
r_mcangle_it2.751
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.119
r_dihedral_angle_4_deg15.854
r_dihedral_angle_3_deg14.648
r_long_range_B_refined7.202
r_long_range_B_other7.185
r_dihedral_angle_1_deg5.857
r_scangle_other5.195
r_scbond_it3.332
r_scbond_other3.331
r_mcangle_it2.751
r_mcangle_other2.751
r_angle_refined_deg2.206
r_mcbond_it1.97
r_mcbond_other1.967
r_angle_other_deg0.942
r_chiral_restr0.138
r_bond_refined_d0.023
r_gen_planes_refined0.011
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1167
Nucleic Acid Atoms
Solvent Atoms95
Heterogen Atoms5

Software

Software
Software NamePurpose
ADSCdata collection
SOLVEphasing
REFMACrefinement
XDSdata reduction
XDSdata scaling