☰ Navigation Tabs
Crystal Structure of the bromodomain of human BAZ2B in complex with acetylated lysine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3G0L pdb entry 3G0L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.7 277.15 30% low MW PEG Smears, 0.1M MES pH 6.7, 15%(v/v) glycerol, VAPOR DIFFUSION, SITTING DROP, temperature 277.15K
Crystal Properties Matthews coefficient Solvent content 4.23 70.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.439 α = 90 b = 96.754 β = 90 c = 57.754 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2011-11-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.98 19.67 99.9 0.084 10.9 5 16437 16407
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.98 2.09 100 0.716 2.1 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 3G0L 1.98 19.5 16407 15575 830 99.69 0.19296 0.1909 0.2002 0.23335 0.2469 RANDOM 41.368
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.67 -0.68 -1.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.473 r_dihedral_angle_3_deg 14.086 r_dihedral_angle_4_deg 13.661 r_long_range_B_refined 7.676 r_long_range_B_other 7.673 r_dihedral_angle_1_deg 5.701 r_scangle_other 3.879 r_mcangle_it 2.771 r_mcangle_other 2.76 r_scbond_other 2.544
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.473 r_dihedral_angle_3_deg 14.086 r_dihedral_angle_4_deg 13.661 r_long_range_B_refined 7.676 r_long_range_B_other 7.673 r_dihedral_angle_1_deg 5.701 r_scangle_other 3.879 r_mcangle_it 2.771 r_mcangle_other 2.76 r_scbond_other 2.544 r_scbond_it 2.524 r_mcbond_it 1.961 r_mcbond_other 1.937 r_angle_refined_deg 1.633 r_angle_other_deg 0.816 r_chiral_restr 0.084 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 941 Nucleic Acid Atoms Solvent Atoms 165 Heterogen Atoms 29
Software Software Software Name Purpose CrystalClear data collection PHASER phasing REFMAC refinement XDS data reduction SCALA data scaling