☰ Navigation Tabs
anti-parallel Fc-knob (T366W) homodimer
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1L6X PDB ENTRY 1L6X
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 291 20% PEG2000 MME, 0.2 M ammonium sulfate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.43 49.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.5 α = 90 b = 44.5 β = 90 c = 205.551 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 315r 2009-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 0.98 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 90.8 8852 8571 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1L6X 2.5 50 9058 8571 425 96.83 0.22556 0.22232 0.2125 0.28689 0.2754 RANDOM 36.828
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.35 0.68 1.35 -2.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.194 r_dihedral_angle_3_deg 17.247 r_dihedral_angle_4_deg 9.525 r_dihedral_angle_1_deg 5.551 r_mcangle_it 4.33 r_scangle_it 4.238 r_mcbond_it 2.819 r_scbond_it 2.752 r_angle_refined_deg 1.141 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.194 r_dihedral_angle_3_deg 17.247 r_dihedral_angle_4_deg 9.525 r_dihedral_angle_1_deg 5.551 r_mcangle_it 4.33 r_scangle_it 4.238 r_mcbond_it 2.819 r_scbond_it 2.752 r_angle_refined_deg 1.141 r_nbtor_refined 0.301 r_nbd_refined 0.203 r_symmetry_vdw_refined 0.196 r_xyhbond_nbd_refined 0.126 r_chiral_restr 0.083 r_symmetry_hbond_refined 0.045 r_bond_refined_d 0.009 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1672 Nucleic Acid Atoms Solvent Atoms 35 Heterogen Atoms 5
Software Software Software Name Purpose BOS data collection PHASER phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling