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Crystal structure of HEPN domain protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 8% Polyethylene glycol 3350, 100mM Imidazole, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.54 51.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.103 α = 90 b = 71.574 β = 90 c = 83.416 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2011-05-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X6A 0.9798 NSLS X6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 36.04 99.04 0.05 7.5 10678 10678 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 36.04 99 0.05 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.7 36.04 9671 9671 1075 99.04 0.22395 0.2176 0.2226 0.28005 0.2794 RANDOM 66.507
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.86 2 -2.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.65 r_dihedral_angle_3_deg 18.629 r_dihedral_angle_4_deg 15.126 r_long_range_B_refined 10.553 r_long_range_B_other 10.553 r_scangle_other 7.977 r_mcangle_it 7.594 r_mcangle_other 7.592 r_dihedral_angle_1_deg 6.803 r_scbond_it 5.092
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.65 r_dihedral_angle_3_deg 18.629 r_dihedral_angle_4_deg 15.126 r_long_range_B_refined 10.553 r_long_range_B_other 10.553 r_scangle_other 7.977 r_mcangle_it 7.594 r_mcangle_other 7.592 r_dihedral_angle_1_deg 6.803 r_scbond_it 5.092 r_scbond_other 5.091 r_mcbond_it 5.053 r_mcbond_other 5.047 r_angle_refined_deg 1.372 r_angle_other_deg 1.001 r_chiral_restr 0.077 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2427 Nucleic Acid Atoms Solvent Atoms 26 Heterogen Atoms
Software Software Software Name Purpose ADSC data collection Phenix-AutoSol model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling Phenix-AutoSol phasing