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Structure of hypothetical protein Cj0539 from Campylobacter jejuni
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 0.05 M Potassium Chloride, 0.01 M Magnesium Chloride, 15 % PEG 6000, VAPOR DIFFUSION, SITTING DROP
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.606 α = 90 b = 58.606 β = 90 c = 49.808 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD MIRROR 2013-10-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97856 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.93 30 99 0.05 39.5 4.5 6872 6872 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.93 1.96 100 0.65 2 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.93 25.27 6530 6530 324 98.97 0.19099 0.18738 0.2002 0.2702 0.2618 RANDOM 48.579
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.28 0.28 -0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.166 r_dihedral_angle_3_deg 12.618 r_long_range_B_refined 11.534 r_long_range_B_other 11.522 r_dihedral_angle_4_deg 10.077 r_scangle_other 7.263 r_mcangle_it 6.445 r_mcangle_other 6.445 r_scbond_it 5.055 r_scbond_other 5.047
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.166 r_dihedral_angle_3_deg 12.618 r_long_range_B_refined 11.534 r_long_range_B_other 11.522 r_dihedral_angle_4_deg 10.077 r_scangle_other 7.263 r_mcangle_it 6.445 r_mcangle_other 6.445 r_scbond_it 5.055 r_scbond_other 5.047 r_mcbond_it 4.106 r_mcbond_other 3.977 r_dihedral_angle_1_deg 3.045 r_angle_refined_deg 1.969 r_angle_other_deg 0.935 r_chiral_restr 0.134 r_bond_refined_d 0.021 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 636 Nucleic Acid Atoms Solvent Atoms 38 Heterogen Atoms
Software Software Software Name Purpose Blu-Ice data collection HKL-3000 phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling