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Xsa43E, a GH43 family enzyme from Butyrivibrio proteoclasticus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 3.4 291 20% PEG8000, 0.2M NaCl, 0.1M Phosphate Citrate buffer , pH 3.4, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.36 47.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.1 α = 90 b = 76.52 β = 90 c = 82.52 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2009-08-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.9795 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.33 56.2 95.9 86160 82628 2 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.33 56.08 2 82097 78444 4136 95.55 0.17786 0.17727 0.1716 0.18881 0.1818 RANDOM 16.882
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 -0.63 0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.862 r_dihedral_angle_4_deg 14.549 r_dihedral_angle_3_deg 10.913 r_dihedral_angle_1_deg 6.335 r_scangle_it 2.415 r_scbond_it 1.622 r_angle_refined_deg 1.222 r_mcangle_it 1.222 r_mcbond_it 0.686 r_chiral_restr 0.088
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.862 r_dihedral_angle_4_deg 14.549 r_dihedral_angle_3_deg 10.913 r_dihedral_angle_1_deg 6.335 r_scangle_it 2.415 r_scbond_it 1.622 r_angle_refined_deg 1.222 r_mcangle_it 1.222 r_mcbond_it 0.686 r_chiral_restr 0.088 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2435 Nucleic Acid Atoms Solvent Atoms 308 Heterogen Atoms 9
Software Software Software Name Purpose SOLVE phasing REFMAC refinement MOSFLM data reduction SCALA data scaling