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Crystal structure of GDP-bound A143S mutant of the S. thermophilus FeoB G-domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.7 293 0.2 M Sodium Chloride, 0.1 M Bis-Tris pH 5.7, 27 % (w/v) PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.24 45.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.684 α = 90 b = 120.768 β = 93.99 c = 49.291 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-09-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9537 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 60.384 99 0.12 8 3.3 17501 17501 25.823
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 99.3 0.505 0.505 1.4 3.4 2557
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 49.22 17477 17477 890 98.91 0.2112 0.2112 0.2086 0.2101 0.2573 0.2618 RANDOM 35.5556
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.56 0.44 0.96 -0.43
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_2_deg 36.964 f_dihedral_angle_4_deg 14.241 f_dihedral_angle_3_deg 12.498 f_dihedral_angle_1_deg 4.685 f_angle_refined_deg 0.876 f_angle_other_deg 0.661 f_chiral_restr 0.047 f_bond_refined_d 0.004 f_gen_planes_refined 0.003 f_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_2_deg 36.964 f_dihedral_angle_4_deg 14.241 f_dihedral_angle_3_deg 12.498 f_dihedral_angle_1_deg 4.685 f_angle_refined_deg 0.876 f_angle_other_deg 0.661 f_chiral_restr 0.047 f_bond_refined_d 0.004 f_gen_planes_refined 0.003 f_bond_other_d 0.001 f_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4011 Nucleic Acid Atoms Solvent Atoms 99 Heterogen Atoms 56
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection PHENIX refinement