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Structural basis for targeting the ribosomal protein S1 of Mycobacterium tuberculosis by pyrazinamide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 8.5 295 magnesium formate, pH 8.5, hanging drop, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.75 55.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.445 α = 90 b = 55.689 β = 90 c = 65.043 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-225 mirrors 2013-04-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON OTHER 0.979
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.31 50
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.31 40.83 7800 868 99.27 0.22205 0.2166 0.2041 0.27073 0.2521 RANDOM 24.221
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.12 -1.11 -1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.086 r_dihedral_angle_4_deg 18.779 r_dihedral_angle_3_deg 16.898 r_dihedral_angle_1_deg 6.144 r_angle_refined_deg 1.814 r_angle_other_deg 0.927 r_chiral_restr 0.121 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.086 r_dihedral_angle_4_deg 18.779 r_dihedral_angle_3_deg 16.898 r_dihedral_angle_1_deg 6.144 r_angle_refined_deg 1.814 r_angle_other_deg 0.927 r_chiral_restr 0.121 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1296 Nucleic Acid Atoms Solvent Atoms 70 Heterogen Atoms
Software Software Software Name Purpose SCALEPACK data scaling SOLVE phasing REFMAC refinement PDB_EXTRACT data extraction DENZO data reduction