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GVIGIAQ segment 147-153 from Human Superoxide Dismutase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 298 1 M sodium acetate pH 4.5, 1.75 M ammonium sulfate, vapor diffusion, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.65 25.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.128 α = 90 b = 4.843 β = 99.5 c = 18.142 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2007-07-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID13 0.895432 ESRF ID13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 90 95.2 0.144 8.5 2.4 415 415 -3 20.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2.05 89.2 0.206 2.4 74
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 24.85 378 378 43 96.12 0.2339 0.2321 0.244 0.2485 0.2708 RANDOM 17.1302
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.35 -0.74 -2.33 -0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 11.609 r_mcbond_it 6.377 r_mcangle_it 5.949 r_scbond_it 4.287 r_dihedral_angle_1_deg 3.286 r_scangle_it 3.158 r_mcbond_other 2.278 r_angle_refined_deg 1.316 r_angle_other_deg 0.734 r_dihedral_angle_2_deg 0.639
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 11.609 r_mcbond_it 6.377 r_mcangle_it 5.949 r_scbond_it 4.287 r_dihedral_angle_1_deg 3.286 r_scangle_it 3.158 r_mcbond_other 2.278 r_angle_refined_deg 1.316 r_angle_other_deg 0.734 r_dihedral_angle_2_deg 0.639 r_symmetry_vdw_other 0.213 r_xyhbond_nbd_refined 0.198 r_nbd_other 0.186 r_nbtor_refined 0.142 r_chiral_restr 0.09 r_nbd_refined 0.085 r_nbtor_other 0.068 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 46 Nucleic Acid Atoms Solvent Atoms 3 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction