☰ Navigation Tabs
Crystal Structure of Glutamate Carboxypeptidase II in a complex with urea-based inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 289 Tris-HCl, PEG 3350, pentaerythritol propoxylate, pH 8.0, vapor diffusion, hanging drop, temperature 289K
Crystal Properties Matthews coefficient Solvent content 3.15 61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.445 α = 90 b = 130.046 β = 90 c = 159.123 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD mirrors SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.91841 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.68 42.77 99.3 0.046 20.5 119024 2 27.675
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.68 1.78 97.8 0.416 0.47 3.65
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.68 42.77 119023 5952 99.28 0.1846 0.1833 0.1823 0.2102 0.2094 RANDOM 25.1735
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.17 -0.34 0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.942 r_dihedral_angle_4_deg 14.623 r_dihedral_angle_3_deg 13.999 r_dihedral_angle_1_deg 5.995 r_scbond_it 3.01 r_mcangle_it 2.72 r_mcbond_it 1.992 r_angle_refined_deg 1.939 r_chiral_restr 0.138 r_bond_refined_d 0.019
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.942 r_dihedral_angle_4_deg 14.623 r_dihedral_angle_3_deg 13.999 r_dihedral_angle_1_deg 5.995 r_scbond_it 3.01 r_mcangle_it 2.72 r_mcbond_it 1.992 r_angle_refined_deg 1.939 r_chiral_restr 0.138 r_bond_refined_d 0.019 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5516 Nucleic Acid Atoms Solvent Atoms 551 Heterogen Atoms 232
Software Software Software Name Purpose XSCALE data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XDS data scaling