☰ Navigation Tabs
Dialyzed HEW lysozyme batch crystallized in 1.9 M CsCl and collected at 100 K.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 193L PDB ENTRY 193L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 293 Dialyzed lysozyme, no buffer added, 1.9 M CsCl, pH 4.5, Batch crystallization, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.01 38.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.935 α = 90 b = 78.935 β = 90 c = 37.065 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M MIRRORS 2013-05-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.09 35.3 98.5 0.039 15.55 3.6 91904 12.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.09 1.16 98.1 0.281 3.47 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 193L 1.09 55.82 73333 44207 4786 99.3 0.155 0.152 0.176 0.2059 RANDOM 16.16
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 0.26 -0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.909 r_sphericity_free 25.113 r_dihedral_angle_4_deg 18.983 r_dihedral_angle_3_deg 13.677 r_sphericity_bonded 7.903 r_dihedral_angle_1_deg 5.743 r_rigid_bond_restr 3.941 r_scbond_it 2.483 r_angle_refined_deg 1.543 r_mcangle_it 1.477
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.909 r_sphericity_free 25.113 r_dihedral_angle_4_deg 18.983 r_dihedral_angle_3_deg 13.677 r_sphericity_bonded 7.903 r_dihedral_angle_1_deg 5.743 r_rigid_bond_restr 3.941 r_scbond_it 2.483 r_angle_refined_deg 1.543 r_mcangle_it 1.477 r_mcbond_it 1.166 r_mcbond_other 1.156 r_angle_other_deg 0.899 r_chiral_restr 0.11 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 155 Heterogen Atoms 9
Software Software Software Name Purpose REFMAC refinement PHASER phasing CNS refinement XDS data reduction XDS data scaling TRUNCATE data scaling MxCuBE data collection