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Crystal structure of porcine aminopeptidase-N complexed with poly-alanine
Crystallization Crystal Properties Matthews coefficient Solvent content 3.15 60.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 260.16 α = 90 b = 62.744 β = 100.28 c = 81.49 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD NOIR-1 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 71538
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 50 71538 3795 99.52 0.1478 0.14511 0.148 0.19812 0.1993 RANDOM 48.882
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.66 -0.23 -0.17 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.342 r_sphericity_free 23.41 r_sphericity_bonded 18.929 r_dihedral_angle_4_deg 18.081 r_dihedral_angle_3_deg 14.127 r_dihedral_angle_1_deg 5.904 r_scbond_it 4.146 r_mcangle_it 3.757 r_mcbond_it 3.066 r_rigid_bond_restr 2.422
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.342 r_sphericity_free 23.41 r_sphericity_bonded 18.929 r_dihedral_angle_4_deg 18.081 r_dihedral_angle_3_deg 14.127 r_dihedral_angle_1_deg 5.904 r_scbond_it 4.146 r_mcangle_it 3.757 r_mcbond_it 3.066 r_rigid_bond_restr 2.422 r_angle_refined_deg 1.278 r_chiral_restr 0.081 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_gen_planes_other 0.001 r_bond_other_d r_angle_other_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7268 Nucleic Acid Atoms Solvent Atoms 788 Heterogen Atoms 266
Software Software Software Name Purpose REFMAC refinement