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Crystal structure of beta-lactamse PenP_E166S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 289 Tris, PEG 3350, ammonium acetate, pH 8.0, vapor diffusion, hanging drop, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2 38.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.31 α = 78.43 b = 46.19 β = 75.71 c = 66.28 γ = 69.36
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 291 IMAGE PLATE RIGAKU RAXIS IV++ 2013-06-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.93 42.88 100 32459 32459 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.93 42.88 32453 1647 92.8 0.1796 0.1768 0.1828 0.2303 0.2325 RANDOM 16.556
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.01 0.03 0.04 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.785 r_dihedral_angle_4_deg 17.9 r_dihedral_angle_3_deg 15.766 r_dihedral_angle_1_deg 6.772 r_mcangle_it 1.961 r_angle_refined_deg 1.902 r_mcbond_it 1.279 r_mcbond_other 1.272 r_angle_other_deg 0.994 r_chiral_restr 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.785 r_dihedral_angle_4_deg 17.9 r_dihedral_angle_3_deg 15.766 r_dihedral_angle_1_deg 6.772 r_mcangle_it 1.961 r_angle_refined_deg 1.902 r_mcbond_it 1.279 r_mcbond_other 1.272 r_angle_other_deg 0.994 r_chiral_restr 0.301 r_bond_refined_d 0.018 r_bond_other_d 0.009 r_gen_planes_refined 0.008 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4000 Nucleic Acid Atoms Solvent Atoms 425 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection MOSFLM data reduction SCALA data scaling PHASES phasing