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CcmL from Thermosynechococcus elongatus BP-1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2QW7 PDB entry 2QW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.6 273 1.8 M MgSO4, 100 mM MES, pH 6.6, VAPOR DIFFUSION, SITTING DROP, temperature 273K
Crystal Properties Matthews coefficient Solvent content 2.06 40.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.901 α = 90 b = 71.901 β = 90 c = 197.137 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2008-01-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97934 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 67.57 99.1 0.099 19.7 6.5 35620 35620 -3 -3 28.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 91 0.421 2.6 3.8 3181
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2QW7 2 20 33553 33553 1760 98.3 0.18279 0.18007 0.1895 0.2343 0.2401 RANDOM 46.123
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.09 3.09 -6.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.126 r_dihedral_angle_4_deg 17.09 r_dihedral_angle_3_deg 14.122 r_long_range_B_refined 7.882 r_long_range_B_other 7.772 r_dihedral_angle_1_deg 7.602 r_scangle_other 4.125 r_scbond_it 2.914 r_mcangle_it 2.897 r_mcangle_other 2.897
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.126 r_dihedral_angle_4_deg 17.09 r_dihedral_angle_3_deg 14.122 r_long_range_B_refined 7.882 r_long_range_B_other 7.772 r_dihedral_angle_1_deg 7.602 r_scangle_other 4.125 r_scbond_it 2.914 r_mcangle_it 2.897 r_mcangle_other 2.897 r_scbond_other 2.701 r_mcbond_it 1.935 r_mcbond_other 1.928 r_angle_refined_deg 1.778 r_angle_other_deg 0.864 r_chiral_restr 0.104 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3633 Nucleic Acid Atoms Solvent Atoms 214 Heterogen Atoms 31
Software Software Software Name Purpose MxDC data collection PHASES phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling