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Crystal structure of ABC transporter solute binding protein BB0719 from Bordetella bronchiseptica RB50, TARGET EFI-510049
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 PROTEIN IN 10 MM HEPES, PH 7.5, 150 MM SODIUM CHLORIDE, 5% GLYCEROL, RESERVOIR: 0.1M BIS-TRIS:HCL, 28% PEG2000 MME, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 2.2 44.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.568 α = 90 b = 68.532 β = 90 c = 153.008 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRRORS 2013-09-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.57 50 99.5 0.065 11.9 5 168537 -5 20.18
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.57 1.6 92.2 0.841 1.8 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.57 50 85398 2661 99.8 0.177 0.176 0.1873 0.212 0.221 RANDOM 33.26
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.47 -0.68 3.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.091 r_dihedral_angle_4_deg 15.529 r_dihedral_angle_3_deg 13.14 r_long_range_B_refined 9.584 r_long_range_B_other 9.508 r_scangle_other 7.196 r_scbond_it 5.911 r_scbond_other 5.911 r_dihedral_angle_1_deg 5.47 r_mcangle_it 4.031
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.091 r_dihedral_angle_4_deg 15.529 r_dihedral_angle_3_deg 13.14 r_long_range_B_refined 9.584 r_long_range_B_other 9.508 r_scangle_other 7.196 r_scbond_it 5.911 r_scbond_other 5.911 r_dihedral_angle_1_deg 5.47 r_mcangle_it 4.031 r_mcangle_other 4.031 r_mcbond_it 3.658 r_mcbond_other 3.658 r_angle_refined_deg 1.343 r_angle_other_deg 0.77 r_chiral_restr 0.078 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4622 Nucleic Acid Atoms Solvent Atoms 489 Heterogen Atoms 6
Software Software Software Name Purpose SHELX model building REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling SHELX phasing