☰ Navigation Tabs
2.4 Angstrom Resolution Crystal Structure of Putative Sugar Kinase from Campylobacter jejuni.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 295 Protein: 1.5mg/mL, 0.3M Sodium cloride, 0.1M HEPES pH 7.5; Screen: 0.2M Calcium acetate, 0.1M Na Cacodylate pH 6.0, 18% (w/v) PEG 8000, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.16 43.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.609 α = 90 b = 85.796 β = 122.39 c = 77.947 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Beryllium lenses 2009-07-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97856 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 30 100 0.069 40.7 8.1 26058 26058 -3 55
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.44 100 0.577 4.1 7.8 1337
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.4 29.16 24593 24593 1317 99.92 0.17973 0.17973 0.17693 0.1836 0.23229 0.2316 RANDOM 63.502
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.87 0.67 -1.16 0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.561 r_dihedral_angle_3_deg 10.787 r_dihedral_angle_4_deg 10.228 r_long_range_B_refined 8.453 r_long_range_B_other 8.427 r_scangle_other 5.561 r_mcangle_it 5.019 r_mcangle_other 5.018 r_scbond_it 3.51 r_scbond_other 3.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.561 r_dihedral_angle_3_deg 10.787 r_dihedral_angle_4_deg 10.228 r_long_range_B_refined 8.453 r_long_range_B_other 8.427 r_scangle_other 5.561 r_mcangle_it 5.019 r_mcangle_other 5.018 r_scbond_it 3.51 r_scbond_other 3.51 r_mcbond_it 3.164 r_mcbond_other 3.164 r_dihedral_angle_1_deg 2.675 r_angle_refined_deg 1.403 r_angle_other_deg 0.7 r_chiral_restr 0.082 r_gen_planes_refined 0.018 r_gen_planes_other 0.016 r_bond_refined_d 0.009 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5088 Nucleic Acid Atoms Solvent Atoms 138 Heterogen Atoms 1
Software Software Software Name Purpose Blu-Ice data collection PHENIX model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing