☰ Navigation Tabs
MazF from S. aureus crystal form I, P212121, 2.1 A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1NE8 PDB ENTRY 1NE8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 293 0.2 M NH4Ac, 0.1 M NaAc pH 4.6, 30% (w/v) PEG 4000, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.85 33.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.692 α = 90 b = 65.19 β = 90 c = 112.011 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-05-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 56.34 99.8 0.104 0.104 14 5.4 26598 -3 30.3
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1NE8 2.1 42.48 0.11 25686 1295 96.4 0.177 0.175 0.1765 0.228 0.2276
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.6633 -5.2204 2.5571
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 13.172 f_angle_d 1.088 f_chiral_restr 0.072 f_bond_d 0.007 f_plane_restr 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3387 Nucleic Acid Atoms Solvent Atoms 218 Heterogen Atoms
Software Software Software Name Purpose ADSC data collection CCP4 model building PHENIX refinement HKL-2000 data reduction HKL-2000 data scaling CCP4 phasing