☰ Navigation Tabs
IspH in complex with 6-chloropyridin-3-ylmethyl diphosphate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3KE8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 293 0.1 M BIS-TRIS, 0.2 M ammonium sulfate, 25% PEG3350, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.2 44.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.13 α = 90 b = 80.9 β = 90 c = 111.89 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2012-12-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 99.9 0.073 16.87 8.9 50868 50817 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 100 0.503 4.68
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 3KE8 1.9 14.87 48341 50711 2535 99.7 0.217 0.215 0.249 0.2513 34.67
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 0.45 -0.29
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 39.961 r_dihedral_angle_2_deg 39.365 r_dihedral_angle_4_deg 16.392 r_sphericity_bonded 16.189 r_dihedral_angle_3_deg 13.71 r_dihedral_angle_1_deg 5.366 r_rigid_bond_restr 4.824 r_mcangle_it 1.718 r_angle_refined_deg 1.362 r_mcbond_it 1.049
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 39.961 r_dihedral_angle_2_deg 39.365 r_dihedral_angle_4_deg 16.392 r_sphericity_bonded 16.189 r_dihedral_angle_3_deg 13.71 r_dihedral_angle_1_deg 5.366 r_rigid_bond_restr 4.824 r_mcangle_it 1.718 r_angle_refined_deg 1.362 r_mcbond_it 1.049 r_mcbond_other 1.049 r_angle_other_deg 0.734 r_chiral_restr 0.085 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4773 Nucleic Acid Atoms Solvent Atoms 190 Heterogen Atoms 48
Software Software Software Name Purpose XDS data scaling REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing