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Structure of XIAP-BIR1 in complex with NF023
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2POP PDB ENTRY 2POP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 9 293 10% PEG 20000, 0.1 M BICINE, pH 9.0 and 2% (v/v) 1,4-Dioxane, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.02 39.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.854 α = 90 b = 76.209 β = 90 c = 71.191 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD ADSC QUANTUM 210 2011-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 76.1 99 22917
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2POP 2.1 71.19 22959 21740 1175 99.3 0.1929 0.19032 0.1986 0.24227 0.2498 RANDOM 40.183
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.62 -0.32 3.58 -1.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.058 r_dihedral_angle_4_deg 16.079 r_dihedral_angle_3_deg 13.238 r_dihedral_angle_1_deg 5.787 r_scangle_it 4.964 r_angle_other_deg 3.705 r_scbond_it 3.114 r_mcangle_it 2.256 r_angle_refined_deg 1.729 r_mcbond_it 1.235
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.058 r_dihedral_angle_4_deg 16.079 r_dihedral_angle_3_deg 13.238 r_dihedral_angle_1_deg 5.787 r_scangle_it 4.964 r_angle_other_deg 3.705 r_scbond_it 3.114 r_mcangle_it 2.256 r_angle_refined_deg 1.729 r_mcbond_it 1.235 r_chiral_restr 0.08 r_gen_planes_other 0.017 r_bond_refined_d 0.012 r_gen_planes_refined 0.01 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2441 Nucleic Acid Atoms Solvent Atoms 136 Heterogen Atoms 141
Software Software Software Name Purpose DNA data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling