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Structural Basis of Ca2+ Selectivity of a Voltage-gated Calcium Channel
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.75 298 0.1M Na-citrate,pH4.75, 2M ammonium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 177.745 α = 90 b = 177.79 β = 132.69 c = 131.105 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-12-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 1.75 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 30 93.3 0.094 5 45979 45979 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.37 99.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.2 29.9 43661 43661 2317 93.24 0.24267 0.24115 0.2414 0.2717 0.272 RANDOM 100.726
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.45 -0.72 3.14 -1.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.815 r_dihedral_angle_4_deg 21.281 r_long_range_B_refined 20.59 r_long_range_B_other 20.59 r_dihedral_angle_3_deg 18.535 r_mcangle_it 15.51 r_mcangle_other 15.486 r_scangle_other 13.037 r_mcbond_it 10.204 r_mcbond_other 10.196
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.815 r_dihedral_angle_4_deg 21.281 r_long_range_B_refined 20.59 r_long_range_B_other 20.59 r_dihedral_angle_3_deg 18.535 r_mcangle_it 15.51 r_mcangle_other 15.486 r_scangle_other 13.037 r_mcbond_it 10.204 r_mcbond_other 10.196 r_scbond_it 8.594 r_scbond_other 8.592 r_dihedral_angle_1_deg 4.834 r_angle_refined_deg 1.643 r_angle_other_deg 1.075 r_chiral_restr 0.081 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_bond_other_d 0.005 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7192 Nucleic Acid Atoms Solvent Atoms 4 Heterogen Atoms 190
Software Software Software Name Purpose HKL-2000 data collection PHENIX model building REFMAC refinement MOSFLM data reduction SCALA data scaling PHENIX phasing