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Crystal structure of the major pollen allergen Bet v 1-A in complex with P303
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FSK PDB entry 1FSK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 293 28% PEG MME 2000, 20mM ammonium sulfate, 0.1M sodium acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.97 37.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.928 α = 90 b = 58.577 β = 90 c = 58.767 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.9334 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 40 100 0.037 20.3 3.5 41699 41699
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.26 100 0.297 2.6 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1FSK 1.2 30 39520 39520 2135 95.04 0.13275 0.13133 0.15969 0.1578 RANDOM 11.437
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.39 -0.17 0.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.647 r_sphericity_free 32.898 r_dihedral_angle_4_deg 31.272 r_dihedral_angle_3_deg 11.858 r_sphericity_bonded 10.649 r_dihedral_angle_1_deg 5.226 r_long_range_B_other 4.567 r_long_range_B_refined 4.564 r_scangle_other 3.089 r_scbond_it 2.399
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.647 r_sphericity_free 32.898 r_dihedral_angle_4_deg 31.272 r_dihedral_angle_3_deg 11.858 r_sphericity_bonded 10.649 r_dihedral_angle_1_deg 5.226 r_long_range_B_other 4.567 r_long_range_B_refined 4.564 r_scangle_other 3.089 r_scbond_it 2.399 r_scbond_other 2.398 r_rigid_bond_restr 2.216 r_angle_refined_deg 1.473 r_mcangle_it 1.392 r_mcangle_other 1.391 r_mcbond_it 1.045 r_mcbond_other 1.045 r_angle_other_deg 0.839 r_chiral_restr 0.104 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1233 Nucleic Acid Atoms Solvent Atoms 321 Heterogen Atoms 21
Software Software Software Name Purpose DNA data collection AMoRE phasing REFMAC refinement XDS data reduction SCALA data scaling