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Crystal structure of Archaeoglobus fulgidus IPCT-DIPPS bifunctional membrane protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2XME PDB ENTRY 2XME
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 295 PEG, sodium malonate, pH 7, in meso crystallization, temperature 22K, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.58 52.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.369 α = 90 b = 107.584 β = 90 c = 123.953 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2013-06-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.8726 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 61.82 99.9 15952
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2XME 2.66 53.85 15813 838 99.66 0.24561 0.24281 0.2525 0.30006 0.3013 RANDOM 61.311
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.44 4.09 -6.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.198 r_dihedral_angle_4_deg 17.747 r_dihedral_angle_3_deg 15.83 r_dihedral_angle_1_deg 4.046 r_angle_refined_deg 0.596 r_angle_other_deg 0.504 r_chiral_restr 0.038 r_bond_refined_d 0.013 r_bond_other_d 0.002 r_gen_planes_refined 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.198 r_dihedral_angle_4_deg 17.747 r_dihedral_angle_3_deg 15.83 r_dihedral_angle_1_deg 4.046 r_angle_refined_deg 0.596 r_angle_other_deg 0.504 r_chiral_restr 0.038 r_bond_refined_d 0.013 r_bond_other_d 0.002 r_gen_planes_refined 0.002 r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3104 Nucleic Acid Atoms Solvent Atoms 9 Heterogen Atoms 39
Software Software Software Name Purpose MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling