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Chromodomain antagonists that target the polycomb-group methyllysine reader protein Chromobox homolog 7 (CBX7)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 298 40% ethylene glycol, 0.1M HEPES pH 7.5, 5% PEG 3000, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.26 45.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.29 α = 90 b = 31.86 β = 119.02 c = 38.39 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2013-07-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.98 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.54 29.5 90.7 9095 8874 2 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.54 1.58 86.08
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.542 29.5 9095 8664 431 90.73 0.17416 0.17221 0.1818 0.21265 0.2266 RANDOM 22.812
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 -0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.068 r_dihedral_angle_3_deg 18.225 r_dihedral_angle_4_deg 13.894 r_dihedral_angle_1_deg 7.046 r_long_range_B_refined 6.791 r_long_range_B_other 6.787 r_scangle_other 5.017 r_scbond_it 3.55 r_scbond_other 3.531 r_mcangle_other 3.357
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.068 r_dihedral_angle_3_deg 18.225 r_dihedral_angle_4_deg 13.894 r_dihedral_angle_1_deg 7.046 r_long_range_B_refined 6.791 r_long_range_B_other 6.787 r_scangle_other 5.017 r_scbond_it 3.55 r_scbond_other 3.531 r_mcangle_other 3.357 r_mcangle_it 3.354 r_mcbond_it 2.249 r_mcbond_other 2.178 r_angle_refined_deg 2.139 r_angle_other_deg 1.018 r_chiral_restr 0.163 r_bond_refined_d 0.022 r_gen_planes_refined 0.013 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 531 Nucleic Acid Atoms Solvent Atoms 40 Heterogen Atoms 26
Software Software Software Name Purpose Blu-Ice data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling