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Crystal structure of glutathione S-transferase from Sinorhizobium meliloti 1021, NYSGRC target 021389
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 289 0.2 ul of 12.6 mg/ml protein in 20mM HEPES pH 7.5, 150 mM NaCl, 10% Glycerol, 0.1% Sodium Azide and 0.5mM TCEP were mixed with 0.2 ul of The Cryos Suite condition #80 (8.5% PEG 1000; 8.5% PEG 8000; 15% glycerol) and equilibrated against 1.9 M NaCl in QIAGEN EasyXtal 15-Well Tool plate, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.07 40.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 182.181 α = 90 b = 53.508 β = 115.88 c = 111.123 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD BE-LENSES 2013-06-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97856 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.78 50 99.9 0.075 10.5 5.2 93260 93167 -3 24
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.78 1.81 100 0.721 0.721 2.1 5.2 4595
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.78 29.8 92782 92699 4636 99.91 0.1629 0.1614 0.1611 0.1904 0.1905 RANDOM 30.2278
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.02 -2.07 -0.44 2.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.598 r_dihedral_angle_4_deg 18.221 r_dihedral_angle_3_deg 14.189 r_dihedral_angle_1_deg 5.643 r_angle_refined_deg 1.68 r_angle_other_deg 1.536 r_chiral_restr 0.102 r_bond_refined_d 0.015 r_gen_planes_refined 0.011 r_bond_other_d 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.598 r_dihedral_angle_4_deg 18.221 r_dihedral_angle_3_deg 14.189 r_dihedral_angle_1_deg 5.643 r_angle_refined_deg 1.68 r_angle_other_deg 1.536 r_chiral_restr 0.102 r_bond_refined_d 0.015 r_gen_planes_refined 0.011 r_bond_other_d 0.01 r_gen_planes_other 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7512 Nucleic Acid Atoms Solvent Atoms 904 Heterogen Atoms 18
Software Software Software Name Purpose SCALEPACK data scaling SHELX phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction HKL-3000 data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXD phasing MLPHARE phasing SOLVE phasing RESOLVE phasing