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MALTODEXTRIN BINDING PROTEIN WITH BOUND MALTETROSE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3MBP PDB ENTRY 3MBP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.2 PROTEIN WAS CRYSTALLIZED FROM 18% PEG 8000, 10 MM CITRATE, PH 6.2
Crystal Properties Matthews coefficient Solvent content 2.44 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.68 α = 90 b = 68.38 β = 112 c = 58.44 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 287 AREA DETECTOR XUONG-HAMLIN MULTIWIRE 1989-01-18 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.76 10 80 0.0992 0.0621 18.026 3.7 31236 19
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.76 1.89 44 0.135 0.51 1.57 1.41
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION ISOMORPHOUS PDB ENTRY 3MBP 1.7 10 2 29814 89 0.188 34.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 26.8 p_staggered_tor 20.2 p_scangle_it 3.827 p_scbond_it 2.48 p_mcangle_it 2.326 p_planar_tor 1.9 p_mcbond_it 1.463 p_xyhbond_nbd 0.237 p_multtor_nbd 0.229 p_chiral_restr 0.202
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 26.8 p_staggered_tor 20.2 p_scangle_it 3.827 p_scbond_it 2.48 p_mcangle_it 2.326 p_planar_tor 1.9 p_mcbond_it 1.463 p_xyhbond_nbd 0.237 p_multtor_nbd 0.229 p_chiral_restr 0.202 p_singtor_nbd 0.182 p_planar_d 0.049 p_angle_d 0.035 p_bond_d 0.019 p_plane_restr 0.01 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2872 Nucleic Acid Atoms Solvent Atoms 151 Heterogen Atoms 45
Software Software Software Name Purpose CHAIN model building PROLSQ refinement SDMS data reduction SDMS data scaling CHAIN phasing