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Crystal structure of N-acetyltransferase from Staphylococcus aureus Mu50
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1U6M pdb entry 1U6M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 296 22%PEG8000,50mM Potassium phosphate monobasic, VAPOR DIFFUSION, HANGING DROP, temperature 296K
Crystal Properties Matthews coefficient Solvent content 2.35 47.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.46 α = 67.23 b = 68.97 β = 91.69 c = 73.46 γ = 75.27
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-07-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9537 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 36.28 92.9 0.083 53259 49478
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 1U6M 2 36.28 50594 46952 2495 92.87 0.19409 0.1917 0.1975 0.23912 0.2405 RANDOM 28.369
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 0.01 -0.04 -0.04 0.07 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.74 r_dihedral_angle_3_deg 14.404 r_dihedral_angle_4_deg 13.565 r_dihedral_angle_1_deg 5.95 r_long_range_B_refined 5.691 r_long_range_B_other 5.452 r_scangle_other 3.548 r_mcangle_it 2.495 r_mcangle_other 2.495 r_scbond_it 2.242
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.74 r_dihedral_angle_3_deg 14.404 r_dihedral_angle_4_deg 13.565 r_dihedral_angle_1_deg 5.95 r_long_range_B_refined 5.691 r_long_range_B_other 5.452 r_scangle_other 3.548 r_mcangle_it 2.495 r_mcangle_other 2.495 r_scbond_it 2.242 r_scbond_other 2.241 r_mcbond_it 1.584 r_mcbond_other 1.582 r_angle_refined_deg 1.246 r_angle_other_deg 0.756 r_chiral_restr 0.072 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6018 Nucleic Acid Atoms Solvent Atoms 527 Heterogen Atoms
Software Software Software Name Purpose Blu-Ice data collection CCP4 model building REFMAC refinement MOSFLM data reduction SCALA data scaling CCP4 phasing