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Structure of a novel cellulase 5 from a sugarcane soil metagenomic library
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 291 35% (v/v) isopropanol, 30% (w/v) PEG3350 and 100 mM Tris, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.9 35.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.888 α = 90 b = 87.512 β = 98.55 c = 66.63 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2012-12-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE W01B-MX2 1.458 LNLS W01B-MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 93.5 41174 41174 1 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 28.55 41174 39059 2062 93.27 0.13284 0.13072 0.1337 0.17271 0.1765 RANDOM 15.097
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.193 r_dihedral_angle_4_deg 19.748 r_dihedral_angle_3_deg 13.283 r_dihedral_angle_1_deg 6.571 r_scangle_it 4.564 r_scbond_it 3.099 r_mcangle_it 1.899 r_angle_refined_deg 1.876 r_mcbond_it 1.206 r_chiral_restr 0.164
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.193 r_dihedral_angle_4_deg 19.748 r_dihedral_angle_3_deg 13.283 r_dihedral_angle_1_deg 6.571 r_scangle_it 4.564 r_scbond_it 3.099 r_mcangle_it 1.899 r_angle_refined_deg 1.876 r_mcbond_it 1.206 r_chiral_restr 0.164 r_bond_refined_d 0.027 r_gen_planes_refined 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4488 Nucleic Acid Atoms Solvent Atoms 389 Heterogen Atoms 16
Software Software Software Name Purpose NatXray data collection PHASER phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling