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Crystal structure of 2-chloromuconate cycloisomerase from Rhodococcus opacus 1CP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MUC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8 296 15% PEG 8000, pH 8.0, vapor diffusion, temperature 296K
Crystal Properties Matthews coefficient Solvent content 2.55 51.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 121.11 α = 90 b = 121.11 β = 90 c = 110.56 γ = 90
Symmetry Space Group P 4 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2008-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X12 0.979 EMBL/DESY, HAMBURG X12
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 28.706 99.3 0.135 9.6 6.7 25628 25628
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.74 99.8 0.494 0.494 1.5 6.7 3691
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1muc 2.7 20 22931 1152 98.71 0.1811 0.1767 0.1801 0.265 0.2643 RANDOM 37.3434
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.46 -2.46 4.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.47 r_dihedral_angle_3_deg 19.914 r_dihedral_angle_4_deg 19.438 r_dihedral_angle_1_deg 6.631 r_mcangle_it 3.784 r_scbond_it 2.7 r_mcbond_it 2.361 r_angle_refined_deg 1.703 r_chiral_restr 0.107 r_bond_refined_d 0.011
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.47 r_dihedral_angle_3_deg 19.914 r_dihedral_angle_4_deg 19.438 r_dihedral_angle_1_deg 6.631 r_mcangle_it 3.784 r_scbond_it 2.7 r_mcbond_it 2.361 r_angle_refined_deg 1.703 r_chiral_restr 0.107 r_bond_refined_d 0.011 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5346 Nucleic Acid Atoms Solvent Atoms 192 Heterogen Atoms 3
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction