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Crystal structure of M. tuberculosis TreS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ZE0 PDB entry 2ZE0, 1UOK, 2PWE, 1WZA experimental model PDB 1UOK PDB entry 2ZE0, 1UOK, 2PWE, 1WZA experimental model PDB 2PWE PDB entry 2ZE0, 1UOK, 2PWE, 1WZA experimental model PDB 1WZA PDB entry 2ZE0, 1UOK, 2PWE, 1WZA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 291 0.1 M NaCitrate, 0.5 M (NH4)2SO4, 1 M Li2SO4, pH 5.6, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.71 66.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 161.64 α = 90 b = 161.64 β = 90 c = 139.11 γ = 120
Symmetry Space Group P 32 1 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-05-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 29.2 99.6 0.06 0.06 16.1 4.7 63561 63561 70.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.74 99.6 0.668 0.668 1.7 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2ZE0, 1UOK, 2PWE, 1WZA 2.6 29.2 60392 60392 3226 99.59 0.21469 0.21469 0.21331 0.24041 0.216 RANDOM 69.239
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.03 1.51 3.03 -4.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.095 r_dihedral_angle_3_deg 17.292 r_dihedral_angle_4_deg 16.354 r_dihedral_angle_1_deg 5.061 r_angle_refined_deg 1.003 r_chiral_restr 0.071 r_bond_refined_d 0.006 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8737 Nucleic Acid Atoms Solvent Atoms 46 Heterogen Atoms 62
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling