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Crystal structure of PfSUB1-prodomain-NIMP.M7 Fab complex with added CaCl2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BH6 PDB ENTRY 1BH6 AND 1MLC experimental model PDB 1MLC PDB ENTRY 1BH6 AND 1MLC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 291.15 20% PEG 3350, 0.2M ammonium formate, 150mM NaCl, 40mM CaCl2, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 291.15K
Crystal Properties Matthews coefficient Solvent content 2.22 44.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.34 α = 90 b = 76.03 β = 102.03 c = 77.88 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M mirrors 2013-05-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.92 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.26 76.17 97.56 0.08488 11.69 3.4 39382 38421 0.51 5.88 31
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.26 2.34 91.69 0.5007 2.16 3 3574
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1BH6 AND 1MLC 2.26 29.34 1.34 38421 38398 1922 97.56 0.1936 0.1936 0.1913 0.192 0.2365 0.2356 random
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 13.238 f_angle_d 0.9 f_chiral_restr 0.062 f_bond_d 0.004 f_plane_restr 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6441 Nucleic Acid Atoms Solvent Atoms 201 Heterogen Atoms 3
Software Software Software Name Purpose XDS data scaling PHENIX model building PHENIX refinement XDS data reduction SCALEPACK data scaling PHENIX phasing