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Crystal structure of E.coli SbcD at 2.5 angstrom resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 2.39 48.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.356 α = 72.35 b = 69.109 β = 84.24 c = 94.233 γ = 83.56
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2012-12-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.97916 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 20 49722
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.5 20 49722 47160 2467 98.3 0.17849 0.17553 0.1916 0.23463 0.1839 RANDOM 35.376
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.93 -0.94 2.1 -2.01 0.84 -1.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.781 r_dihedral_angle_4_deg 21.444 r_dihedral_angle_3_deg 17.079 r_dihedral_angle_1_deg 6.111 r_scangle_it 1.856 r_angle_refined_deg 1.252 r_scbond_it 1.115 r_mcangle_it 0.772 r_mcbond_it 0.408 r_chiral_restr 0.079
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.781 r_dihedral_angle_4_deg 21.444 r_dihedral_angle_3_deg 17.079 r_dihedral_angle_1_deg 6.111 r_scangle_it 1.856 r_angle_refined_deg 1.252 r_scbond_it 1.115 r_mcangle_it 0.772 r_mcbond_it 0.408 r_chiral_restr 0.079 r_bond_refined_d 0.009 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10332 Nucleic Acid Atoms Solvent Atoms 583 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling